A B C D E F G H I J K L M N O P R S T U V W X Z _

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generateOutput() - Method in class idl.tmt.util.RBInputGenerator

GenericFileReader - class idl.tmt.representation.matrix.GenericFileReader.

Reads the contents of a file on disk, one line at a time

GenericFileReader(String) - Constructor for class idl.tmt.representation.matrix.GenericFileReader

GenericFilesystemDocumentProvider - class idl.tmt.documentsource.filesystem.GenericFilesystemDocumentProvider.

This class implements a filesystemDocumentProvide for a generic filesystems.

GenericFilesystemDocumentProvider.DirectoryFilter - class idl.tmt.documentsource.filesystem.GenericFilesystemDocumentProvider.DirectoryFilter.

GenericFilesystemDocumentProvider.DirectoryFilter(GenericFilesystemDocumentProvider) - Constructor for class idl.tmt.documentsource.filesystem.GenericFilesystemDocumentProvider.DirectoryFilter

GenericFilesystemDocumentProvider.HTMLFileFilter - class idl.tmt.documentsource.filesystem.GenericFilesystemDocumentProvider.HTMLFileFilter.

GenericFilesystemDocumentProvider.HTMLFileFilter(GenericFilesystemDocumentProvider) - Constructor for class idl.tmt.documentsource.filesystem.GenericFilesystemDocumentProvider.HTMLFileFilter

GenericFilesystemDocumentProvider(File, FilenameFilter) - Constructor for class idl.tmt.documentsource.filesystem.GenericFilesystemDocumentProvider

Creates a new GenericFilesystemDocumentProvider.

GenericFilesystemDocumentProviderTest - class idl.tmt.documentsource.filesystem.GenericFilesystemDocumentProviderTest.

Created on Feb 26, 2004

GenericFilesystemDocumentProviderTest(String) - Constructor for class idl.tmt.documentsource.filesystem.GenericFilesystemDocumentProviderTest

Constructor for GenericFilesystemDocumentProviderTest.

GenericHardClustering - class idl.tmt.representation.GenericHardClustering.

A generic hard clustering that can be built from a soft clustering.

GenericHardClustering.GenericHardCluster - class idl.tmt.representation.GenericHardClustering.GenericHardCluster.

GenericHardClustering.GenericHardCluster(GenericHardClustering, int[], int, double) - Constructor for class idl.tmt.representation.GenericHardClustering.GenericHardCluster

GenericHardClustering(SoftClustering, IndexedCollection) - Constructor for class idl.tmt.representation.GenericHardClustering

genFDP - Variable in class idl.tmt.documentsource.filesystem.GenericFilesystemDocumentProviderTest

genUM - Variable in class idl.tmt.documentsource.webcrawl.StringReplacementURLMapperTest

getAllowMetaNames() - Method in class idl.tmt.representation.MetaTextRepresentationBuilder

Gets a set of the Strings that are allowed for "meta" names in this document representation.

getAllPositiveLogOddsTerms() - Method in interface idl.tmt.representation.HardCluster

getAllPositiveLogOddsTerms() - Method in class idl.tmt.representation.GenericHardClustering.GenericHardCluster

Returns an array of all terms in sorted order with a positive log-odds-ratio.

getClasses(int) - Method in class idl.tmt.classification.SoftClusteringClassification

Gets the classes that the given document belongs to.

getClasses(int) - Method in class idl.tmt.classification.SimpleClassification

getClasses(int) - Method in interface idl.tmt.classification.DocumentClassification

getClassification() - Method in interface idl.tmt.classification.ClassificationBuilder

getClassification() - Method in class idl.tmt.classification.HTMLMetricsClassifier

getClassName(int) - Method in class idl.tmt.classification.SoftClusteringClassification

getClassName(int) - Method in class idl.tmt.classification.SimpleClassification

getClassName(int) - Method in interface idl.tmt.classification.DocumentClassification

getCluster(int) - Method in class idl.tmt.representation.DensityBasedClustering

Gets the cluster corresponding to the given cluster index.

getCluster(int) - Method in interface idl.tmt.representation.Clustering

getCluster(int) - Method in class idl.tmt.representation.GenericHardClustering

Returns the cluster associated with this cluster ID

getClusterer() - Method in class idl.tmt.tasks.ClusteringTask

getClusterer(String) - Method in class idl.tmt.ToolkitEnvironment

Retrieves a clusterer from the shared repository.

getClustererName() - Method in class idl.tmt.tasks.AnalysisTask

getClusterMembership(int) - Method in interface idl.tmt.representation.HardClustering

getClusterMembership(int) - Method in class idl.tmt.representation.GenericHardClustering

returns the clusterID that this document belongs to

getClusterMembershipProbabilities(int) - Method in class idl.tmt.representation.DensityBasedClustering

Gets the probabilities of cluster membership for the given document ID

getClusterMembershipProbabilities(int) - Method in interface idl.tmt.representation.SoftClustering

getClusterModelsNumericAtts() - Method in class idl.tmt.clusterers.EnhancedEM

Return the normal distributions for the cluster models

getClusterPriors() - Method in class idl.tmt.clusterers.EnhancedEM

Return the priors for the clusters

getCollection(String) - Method in class idl.tmt.ToolkitEnvironment

Retrieves a collection from the shared repository.

getCollectionName() - Method in class idl.tmt.tasks.IndexingTask

getCollectionName() - Method in class idl.tmt.tasks.ClusteringTask

getCollectionName() - Method in class idl.tmt.tasks.AnalysisTask

getColumn(int) - Method in class idl.tmt.representation.matrix.TmtMatrix

get a column from the matrix

getColumnCentered() - Method in class idl.tmt.representation.matrix.TmtMatrix

returns column-centered version of the matrix

getColumnNormalized() - Method in class idl.tmt.representation.matrix.TmtMatrix

returns column-normalized (unit length) version of the matrix

getColumns(int, int) - Method in class idl.tmt.representation.matrix.TmtMatrix

construct a new matrix containing a subset of the columns of this matrix

getConfig() - Method in class idl.tmt.tasks.AnalysisTask

getCorrelationMatrix() - Method in class idl.tmt.representation.matrix.TmtMatrix

computes and returns the correlation matrix of this matrix

getDebug() - Method in class idl.tmt.clusterers.EnhancedEM

Get debug mode

getDefaultIndexName() - Method in interface idl.tmt.documentsource.webcrawl.URLMapper

Returns the default name given to remote URLs which do not have a file name component.

getDefaultIndexName() - Method in class idl.tmt.documentsource.webcrawl.StringReplacementURLMapper

Returns the default index name -- used for cases where the remote url ends in a slash

getDefaultIndexName() - Method in class idl.tmt.documentsource.webcrawl.MultiMapURLMapper

Returns the default index name

getDocFile(int) - Method in class idl.tmt.representation.IndexedCollection

getDocID(File) - Method in class idl.tmt.documentsource.webcrawl.MultiMapDocumentIDMap

Returns the Document ID referred to by the File of the local document provided.

getDocID(File) - Method in interface idl.tmt.documentsource.DocumentIDMapper

getDocTermIDs(int) - Method in class idl.tmt.representation.IndexedCollection

getDocTerms(int) - Method in class idl.tmt.representation.IndexedCollection

getDocumentClassifications() - Method in class idl.tmt.representation.IndexedCollection

getDocumentIDByRank(int) - Method in interface idl.tmt.representation.Cluster

getDocumentIDByRank(int) - Method in class idl.tmt.representation.DensityBasedClustering.DensityBasedSoftCluster

Returns the document ID of the document with the given rank, in the document ordering by probabilities.

getDocumentIDByRank(int) - Method in class idl.tmt.representation.GenericHardClustering.GenericHardCluster

For now, just returns a document ID, in no particular order.

getDocumentIDMapper() - Method in class idl.tmt.representation.IndexedCollection

getDocumentIDMapper() - Method in class idl.tmt.documentsource.webcrawl.WgetWebCrawlContext

Returns the DocumentIDMapper for this web crawl

getDocumentIDMapper() - Method in interface idl.tmt.documentsource.webcrawl.WebCrawlContext

Retrieves the DocumentIDMapper object associated with this web crawl.

getDocumentIDs() - Method in interface idl.tmt.representation.HardCluster

getDocumentIDs() - Method in class idl.tmt.representation.GenericHardClustering.GenericHardCluster

Returns an array of docuemnt ID's in this cluster

getDocumentProvider() - Method in class idl.tmt.documentsource.webcrawl.WgetWebCrawlContext

Returns a reference to the FilesystemDocumentProvider

getDocumentProvider() - Method in interface idl.tmt.documentsource.webcrawl.WebCrawlContext

Provides the document provider which will traverse the local filesystem and retrieve all the documents mirrored with this web crawl.

getEigenvalueDecomposition(DoubleMatrix2D) - Method in class idl.tmt.representation.matrix.MatrixManipulator

getElapsedTimeMillis() - Method in class idl.tmt.util.Stopwatch

getElapsedTimeSecs() - Method in class idl.tmt.util.Stopwatch

getFilter() - Method in class idl.tmt.documentparsing.TextDocumentParser

getFilter(String, Map) - Method in class idl.tmt.documentparsing.filters.FilterFactory

Creates a new Filter object based on the name and parameters.

getFilters() - Method in class idl.tmt.tasks.IndexingTask

getGlobalTermCounts(TmtMatrix) - Method in class idl.tmt.representation.transformations.TermOccurrenceFilter

getHardClusterForDoc(int) - Method in class idl.tmt.representation.TmtClustering

getIDFromValue(Object) - Method in class idl.tmt.util.IDMap

getIndexThreshold() - Method in class idl.tmt.classification.HTMLMetricsClassifier

getInitializer() - Method in class idl.tmt.clusterers.EnhancedEM

getInputDirName() - Method in class idl.tmt.tasks.IndexingTask

getInputFileName() - Method in class idl.tmt.tasks.IndexingTask

getInstance() - Static method in class idl.tmt.ToolkitEnvironment

getInstance() - Static method in class idl.tmt.documentparsing.filters.FilterFactory

getInstanceCount() - Method in class idl.tmt.training.RandomSelector

getLeftSingularVectors() - Method in class idl.tmt.representation.matrix.TmtMatrix

returns a TmtMatrix containing the left singular vectors of this matrix

getLocalDoc(int) - Method in class idl.tmt.documentsource.webcrawl.MultiMapDocumentIDMap

Returns the local URL of the document corresponding to the passed in Document ID.

getLocalDoc(int) - Method in interface idl.tmt.documentsource.DocumentIDMapper

getLocalFileIterator() - Method in class idl.tmt.documentsource.webcrawl.MultiMapURLMapper

getLogFile() - Method in class idl.tmt.ToolkitEnvironment

getLogFile() - Method in class idl.tmt.tasks.TaskManager

getLogLikely() - Method in class idl.tmt.clusterers.EnhancedEM

getLogOddsForTerm(int, int) - Method in class idl.tmt.util.LogOddsUtil

getMatrix() - Method in class idl.tmt.representation.IndexedCollection

getMatrix() - Method in class idl.tmt.representation.matrix.TmtMatrix

getMaxClusterersToBuild() - Method in class idl.tmt.clusterers.EnhancedEM

Get the maximum number of clusterers to build when seeking the best one.

getMaxIterations() - Method in class idl.tmt.clusterers.EnhancedEM

Get the maximum number of iterations

getMean() - Method in class idl.tmt.representation.matrix.VectorNormalizer

getMinLength() - Method in class idl.tmt.documentparsing.filters.LengthFilter

getMinOccurrences() - Method in class idl.tmt.representation.transformations.TermOccurrenceFilter

getMinStdDev() - Method in class idl.tmt.clusterers.EnhancedEM

Get the minimum allowable standard deviation.

getName() - Method in class idl.tmt.tasks.ClusteringTask

getName() - Method in class idl.tmt.tasks.AnalysisTask

getName() - Method in class idl.tmt.classification.SoftClusteringClassification

getName() - Method in class idl.tmt.classification.SimpleClassification

getName() - Method in interface idl.tmt.classification.DocumentClassification

getNextDocument() - Method in class idl.tmt.documentsource.webcrawl.WgetWebCrawlContext

Returns the next document URL

getNextDocument() - Method in interface idl.tmt.documentsource.DocumentProvider

Returns a URL of the next available document.

getNextDocument() - Method in class idl.tmt.documentsource.filesystem.GenericFilesystemDocumentProvider

Returns the next document in our queue

getNorm() - Method in class idl.tmt.representation.matrix.VectorNormalizer

getNumClasses() - Method in class idl.tmt.classification.SoftClusteringClassification

getNumClasses() - Method in class idl.tmt.classification.SimpleClassification

getNumClasses() - Method in interface idl.tmt.classification.DocumentClassification

getNumClusters() - Method in class idl.tmt.representation.TmtClustering

getNumClusters() - Method in class idl.tmt.representation.DensityBasedClustering

gets the number of clusters in this clustering.

getNumClusters() - Method in interface idl.tmt.representation.Clustering

getNumClusters() - Method in class idl.tmt.representation.GenericHardClustering

returns the number of clusters in this clustering

getNumClusters() - Method in class idl.tmt.clusterers.EnhancedEM

Get the number of clusters

getNumDocs() - Method in class idl.tmt.representation.IndexedCollection

getNumDocsWithTerm(int, int) - Method in class idl.tmt.util.TermFrequencyUtil

getNumDocuments() - Method in interface idl.tmt.representation.HardCluster

getNumDocuments() - Method in class idl.tmt.representation.DensityBasedClustering

Returns the number of documents in this clustering

getNumDocuments() - Method in interface idl.tmt.representation.Clustering

getNumDocuments() - Method in class idl.tmt.representation.GenericHardClustering

Returns the number of documents in this clustering

getNumDocuments() - Method in class idl.tmt.representation.GenericHardClustering.GenericHardCluster

Returns the number of docs in this cluster

getNumIterations() - Method in class idl.tmt.clusterers.BestKMeansEMInitializer

getNumTerms() - Method in class idl.tmt.representation.IndexedCollection

getOptions() - Method in class idl.tmt.clusterers.EnhancedEM

Gets the current settings of EM.

getOutputDir() - Method in class idl.tmt.ToolkitEnvironment

getOutputDir() - Method in class idl.tmt.tasks.TaskManager

getOutputFile() - Method in class idl.tmt.util.RBInputGenerator

getPrior() - Method in interface idl.tmt.representation.Cluster

getPrior() - Method in class idl.tmt.representation.DensityBasedClustering.DensityBasedSoftCluster

getPrior() - Method in class idl.tmt.representation.GenericHardClustering.GenericHardCluster

getPrior(int) - Method in class idl.tmt.representation.TmtClustering

getProbabilityForDocID(int) - Method in interface idl.tmt.representation.SoftCluster

getProbabilityForDocID(int) - Method in class idl.tmt.representation.DensityBasedClustering.DensityBasedSoftCluster

Returns the probability of membership to this cluster for the given doc id.

getProbabilityThreshold() - Method in class idl.tmt.classification.SoftClusteringClassification

getRegex() - Method in class idl.tmt.training.RegexSelector

getRemoteCrawlRoots() - Method in class idl.tmt.documentsource.webcrawl.WgetWebCrawlContext

This method is unsupported for this implementation, and returns null.

getRemoteCrawlRoots() - Method in interface idl.tmt.documentsource.webcrawl.WebCrawlContext

Retrieves the URLs used as the remote root of the crawl.

getRemoteURL(File) - Method in class idl.tmt.representation.IndexedCollection

getRepresentation() - Method in class idl.tmt.representation.BagOfWordsRepresentationBuilder

getRepresentation() - Method in interface idl.tmt.representation.RepresentationBuilder

getResultBuffer() - Method in class idl.tmt.documentparsing.filters.Stemmer

Returns a reference to a character buffer containing the results of the stemming process.

getResultLength() - Method in class idl.tmt.documentparsing.filters.Stemmer

Returns the length of the word resulting from the stemming process.

getRightSingularVectors() - Method in class idl.tmt.representation.matrix.TmtMatrix

returns a TmtMatrix containing the right singular vectors of this matrix

getRoot() - Method in class idl.tmt.documentsource.webcrawl.WgetWebCrawlContext

Returns the local root directory where the mirrored documents are located.

getRoot() - Method in interface idl.tmt.documentsource.filesystem.FilesystemDocumentProvider

Retrieves the root directory of the filesystem where documents are returned from.

getRoot() - Method in class idl.tmt.documentsource.filesystem.GenericFilesystemDocumentProvider

Returns the root directory of this document provider

getRow(int) - Method in class idl.tmt.representation.matrix.TmtMatrix

get a row from the matrix

getRows(int, int) - Method in class idl.tmt.representation.matrix.TmtMatrix

construct a new matrix containing a subset of the columns of this matrix

getSeed() - Method in class idl.tmt.training.RandomSelector

getSeed() - Method in class idl.tmt.clusterers.EnhancedEM

Get the random number seed

getSingularValueDecomposition(DoubleMatrix2D) - Method in class idl.tmt.representation.matrix.MatrixManipulator

getSingularValues() - Method in class idl.tmt.representation.matrix.TmtMatrix

returns a diagonal TmtMatrix containing the singular values of this matrix

getSortedOrdering(double[], boolean) - Static method in class idl.tmt.util.ArrayUtils

getStatus() - Method in class idl.tmt.training.RegexSelector

getStatus() - Method in class idl.tmt.training.RandomSelector

getStatus() - Method in interface idl.tmt.training.TrainingSetConstructor

getStatus() - Method in class idl.tmt.training.FullCollectionSelector

getStatus() - Method in class idl.tmt.representation.transformations.MatrixRowNormalizer

getStatus() - Method in class idl.tmt.representation.transformations.StopListFilter

getStatus() - Method in class idl.tmt.representation.transformations.TermOccurrenceFilter

getStatus() - Method in interface idl.tmt.representation.transformations.CollectionTransformation

Provides a short string description of the collection transformation.

getStatus() - Method in class idl.tmt.representation.transformations.BinarizeAllTermsTransformation

getStatus() - Method in class idl.tmt.representation.transformations.TfIdfWeighter

getStatus() - Method in class idl.tmt.representation.transformations.MatrixColumnCenterer

getStopWordFile() - Method in class idl.tmt.documentparsing.filters.StopWordFilter

getStopWordsFile() - Method in class idl.tmt.representation.transformations.StopListFilter

getTableThreshold() - Method in class idl.tmt.classification.HTMLMetricsClassifier

getTerm(int) - Method in class idl.tmt.representation.TermList

Gets the term corresponding to this term ID.

getTerm(int) - Method in class idl.tmt.representation.IndexedCollection

getTermDocFrequency(int) - Method in interface idl.tmt.representation.HardCluster

getTermDocFrequency(int) - Method in class idl.tmt.representation.GenericHardClustering.GenericHardCluster

Returns the number of documents in this cluster that contain the given term

getTermDocs(int) - Method in class idl.tmt.representation.IndexedCollection

getTermID(String) - Method in class idl.tmt.representation.TermList

Gets the integer term ID corresponding to this term.

getTermIDByDocFreqency(int) - Method in interface idl.tmt.representation.HardCluster

getTermIDByDocFreqency(int) - Method in class idl.tmt.representation.GenericHardClustering.GenericHardCluster

Returns the termID with the given rank in a sorting by the number of documents the term occurs in.

getTermIDByLORRank(int) - Method in interface idl.tmt.representation.HardCluster

getTermIDByLORRank(int) - Method in class idl.tmt.representation.GenericHardClustering.GenericHardCluster

Returns the term ID for this cluster with the given rank.

getTermIDByRank(int, int) - Method in class idl.tmt.util.LogOddsUtil

getTermIDByRank(int, int) - Method in class idl.tmt.util.TermFrequencyUtil

getTermList() - Method in class idl.tmt.representation.BagOfWordsRepresentationBuilder

getTermList() - Method in class idl.tmt.representation.IndexedCollection

getTermList() - Method in interface idl.tmt.representation.RepresentationBuilder

getTermLogOddsRatio(int) - Method in interface idl.tmt.representation.HardCluster

getTermLogOddsRatio(int) - Method in class idl.tmt.representation.GenericHardClustering.GenericHardCluster

Returns the log-odds-ratio for the given term in this cluster

getTopNDocumentIDs(int) - Method in interface idl.tmt.representation.SoftCluster

getTopNDocumentIDs(int) - Method in class idl.tmt.representation.DensityBasedClustering.DensityBasedSoftCluster

Returns an array of n document ID's, sorted decending by their probability of membership to this cluster.

getTopNFrequentTerms(int) - Method in interface idl.tmt.representation.HardCluster

getTopNFrequentTerms(int) - Method in class idl.tmt.representation.GenericHardClustering.GenericHardCluster

Returns the top N termID's, ordered by frequency

getTopNLogOddsTerms(int) - Method in interface idl.tmt.representation.HardCluster

getTopNLogOddsTerms(int) - Method in class idl.tmt.representation.GenericHardClustering.GenericHardCluster

Returns the top n term IDs, in sorted order, for this cluster

getTopNterms(int, int) - Method in class idl.tmt.util.LogOddsUtil

getTopNterms(int, int) - Method in class idl.tmt.util.TermFrequencyUtil

getTranspose(double[][]) - Static method in class idl.tmt.util.ArrayUtils

getType() - Method in class idl.tmt.tasks.AnalysisTask

getURL() - Method in class idl.tmt.documentsource.webcrawl.MultiMapURLMapper.URLWrapper

getURLMapper() - Method in class idl.tmt.representation.IndexedCollection

getURLMapper() - Method in class idl.tmt.documentsource.webcrawl.WgetWebCrawlContext

returns the URL Mapper object

getURLMapper() - Method in interface idl.tmt.documentsource.webcrawl.WebCrawlContext

Retrieves the URLMapper object associated with this web crawl.

getUseClustering() - Method in class idl.tmt.classification.SoftClusteringClassification

getUseCollection() - Method in class idl.tmt.util.RBInputGenerator

getValue() - Method in class idl.tmt.representation.transformations.BinarizeAllTermsTransformation

getValue(int, int) - Method in class idl.tmt.representation.matrix.TmtMatrix

getValueFromID(int) - Method in class idl.tmt.util.IDMap

getWeight() - Method in class idl.tmt.representation.BagOfWordsRepresentationBuilder

getWeight() - Method in interface idl.tmt.representation.RepresentationBuilder

globalInfo() - Method in class idl.tmt.clusterers.EnhancedEM

Returns a string describing this clusterer

goodWordSet - Variable in class idl.tmt.documentparsing.filters.WordNetFilter